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Kid-friendly manga Rating Comment
(The) Adventures of Panda (manga)
Angelic Layer (manga)
Animal Academy: Hakobune Hakusho (manga) 10+
Aria (manga)
Astro Boy (manga) All ages
Azumanga Daioh (manga) Officially rated 13+ but suitable for preteens - much like the anime, there is some occasional mild language and innuendo, but it's largely harmless.
B.B Explosion (manga) All ages
Bakegyamon (manga) All ages
Baron: The Cat Returns (manga) All ages
(The) Big Adventures of Majoko (manga) All ages
Big Hero 6 (manga) All ages, but like the movie deals with a bit of tragedy/family death.
Cardcaptor Sakura (manga) All ages, but like the anime has some controversial relationships that some parents may not find suitable for the youngest of readers.
Cardfight!! Vanguard (manga)
Chi's Sweet Home (manga) All ages
ChocoMimi (manga) All ages
Cowa! (manga) All ages
Cross Game (manga)
Dinosaur Hour (manga) All ages
Disney Fairies: Petite's Little Diary (manga)
Doraemon (manga) All ages
Dr. Slump (manga)
Fairy Idol Kanon (manga) All ages
Fluffy, Fluffy Cinnamoroll (manga) All ages
Gon (manga) All ages
Hikaru no Go (manga) All ages
Hollow Fields (OEL manga) All ages
Kamichama Karin (manga)
Kiichi and the Magic Books (manga) All ages
Kilala Princess (manga) All ages
Kingdom Hearts (manga) Good 7+ (Mild fantasy violence)
Kitaro (manga)
Kitchen Princess (manga) Officially rated 13+ but suitable for preteens - there is some mature subject matter dealt with, such as a character with an eating disorder, but everything is handled sensitively and in an appropriate matter.
LBX - Little Battlers eXperience (manga) All ages
Leave it to PET! (manga) All ages
(The) Legend of Zelda: A Link to the Past (manga Akira Himekawa) All ages
(The) Legend of Zelda: Majora's Mask (manga) All ages
(The) Legend of Zelda: Ocarina of Time (manga) All ages
(The) Legend of Zelda: Oracle of Ages (manga) All ages
(The) Legend of Zelda: Oracle of Seasons (manga) All ages
(The) Legend of Zelda: Phantom Hourglass (manga) All ages
(The) Legend of Zelda: The Minish Cap (manga) All ages
Legendz (manga)
A Little Snow Fairy Sugar (manga) All ages
Magical Pokémon Journey (manga)
MegaMan NT Warrior (manga) All ages
Nichijou (manga) According to Right Stuf this is rated as suitable for all ages (though Vertical doesn't put ratings on the physical copies of their books), though like the anime there is some occasional mild language and PG innuendo relating to a character's habit of drawing yaoi (nothing explicit is ever seen or referenced). Most of the strips are harmless.
Ninja Baseball Kyuma! (manga) All ages
Plum Crazy! Tales of A Tiger-Striped Cat (manga) All ages
Pokémon Adventures (manga) All ages
Pokémon: Black and White (manga) All ages
A Polar Bear in Love (manga) All ages
Saint Tail (manga)
Sand Land (manga)
She and Her Cat (manga)
Shugo Chara! (manga) Officially rated 13+ but suitable for preteens - the 13+ rating is likely due to the "relationship" between a middle school girl and a high school boy, which is largely cutesy rather than crossing into inappropriate territory and is perfectly suitable for preteens. (This column expands more on it: http://mangabookshelf.com/8591/off-the-shelf-for-kids-or-not-for-kids/)
Spirited Away (ani manga)
Splatoon (manga)
Swans in Space (manga) All ages
Ultra Maniac (manga) All ages
Unico (manga) All ages
Wolf Children: Ame & Yuki (manga)
Yo-kai Watch (manga) All ages
Yotsuba&! (manga) Very good All ages